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Ching-Wei Wang, Cheng-Ta Huang, Jia-Hong Lee, Chung-Hsing Li, Sheng-Wei Chang, Ming-Jhih Siao, Tat-Ming Lai, Bulat Ibragimov, Tomaz Vrtovec, Olaf Ronneberger, Philipp Fischer, Tim F. Cootes and Claudia Lindner
A benchmark for comparison of dental radiography analysis algorithms
Medical Image Analysis, 31:63-76, 2016
[doi: 10.1016/j.media.2016.02.004]
[IF: 4.188 (2016); 8/105 computer science, interdisciplinary applications; 1st quartile]

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Jianhua Yao, Joseph E. Burns, Daniel Forsberg, Alexander Seitel, Abtin Rasoulian, Purang Abolmaesumi, Kerstin Hammernik, Martin Urschler, Bulat Ibragimov, Robert Korez, Tomaz Vrtovec, Isaac Castro-Mateos, Jose M. Pozo, Alejandro F. Frangi, Ronald M. Summers and Shuo Li
A multi-center milestone study of clinical vertebral CT segmentation
Computerized Medical Imaging and Graphics, 49:16-28, 2016
[doi: 10.1016/j.compmedimag.2015.12.006]
[IF: 1.738 (2016); 72/126 radiology, nuclear medicine & medical imaging; 3rd quartile]

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Tim Jerman, Franjo Pernus, Bostjan Likar and Ziga Spiclin
Blob enhancement and visualization for improved intracranial aneurysm detection
IEEE Transactions on Visualization and Computer Graphics, 22(6):1705-1717, 2016
[doi: 10.1109/TVCG.2015.2446493]
[IF: 2.254 (2016); 14/106 computer science, sowtware engineering; 1st quartile]

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Dejan Knez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Computer-assisted screw size and insertion trajectory planning for pedicle screw placement surgery
IEEE Transactions on Medical Imaging, 35(6):1420-1430, 2016
[doi: 10.1109/TMI.2016.2514530]
[IF: 3.942 (2016); 9/105 computer science, interdisciplinary applications; 1st quartile]

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Jurij Jemec, Franjo Pernus, Bostjan Likar and Miran Buermen
Deconvolution-based restoration of SWIR pushbroom imaging spectrometer images
Optics Express, 24(21):24704-24718, 2016
[doi: 10.1364/OE.24.024704]
[IF: 3.307 (2016); 16/92 optics; 1st quartile]

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Dejan Knez, Janez Mohar, Robert J. Cirman, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Dolocanje velikosti in vstavitvene trajektorije pedikularnih vijakov v racunalniskotomografskih (CT) slikah deformacij prsne hrbtenice: primerjava rocnega in racunalnisko podprtega predoperacijskega nacrtovanja
Zdravniski vestnik, 85(11-12):619-631, 2016

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Tim Jerman, Franjo Pernus, Bostjan Likar and Ziga Spiclin
Enhancement of vascular structures in 3D and 2D angiographic images
IEEE Transactions on Medical Imaging, 35(9):2107-2118, 2016
[doi: 10.1109/TMI.2016.2550102]
[IF: 3.942 (2016); 9/105 computer science, interdisciplinary applications; 1st quartile]

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Peter Naglic, Franjo Pernus, Bostjan Likar and Miran Buermen
Estimation of optical properties by spatially resolved reflectance spectroscopy in the subdiffusive regime
Journal of Biomedical Optics, 21(9):095003, 2016
[doi: 10.1117/1.JBO.21.9.095003]
[IF: 2.530 (2016); 40/126 radiology, nuclear medicine & medical imaging; 2nd quartile]

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Tom P.C. Schloesser, Michiel M.A. Janssen, Tomaz Vrtovec and René M. Castelein
Letter to the editor concerning ‘‘Pelvic incidence: an anatomic investigation of 880 cadaveric specimens’’ by Weinberg DS, Morris WZ, Gebhart JJ, Liu RW: Eur Spine J (2015), doi: 10.1007/s00586-015-4317-z
European Spine Journal, 25(9):3004-3005, 2016
[doi: 10.1007/s00586-015-4363-6]
[IF: 2.563 (2016); 18/76 orthopedics; 1st quartile]

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Blaz Cugmas and Peter Naglic
Obstojnost crnil v vodnih fantomih za uporabo z difuzno reflektancno spektroskopijo
Elektrotehniski vestnik, 83(3):93-98, 2016

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Andraz Mehle, Marko Bukovec, Bostjan Likar and Dejan Tomazevic
Print registration for automated visual inspection of transparent pharmaceutical capsules
Machine Vision and Applications, 27(7):1087-1102, 2016
[doi: 10.1007/s00138-016-0797-z]
[IF: 1.797 (2016); 9/22 computer science, cybernetics; 2nd quartile]

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Alfiia Galimzianova, Franjo Pernus, Bostjan Likar and Ziga Spiclin
Stratified mixture modeling for segmentation of white-matter lesions in brain MR images
NeuroImage, 124(Part A):1031-1043, 2016
[doi: 10.1016/j.neuroimage.2015.09.047]
[IF: 5.835 (2016); 1/14 neuroimaging; 1st quartile]

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Ziga Lesjak, Franjo Pernus, Bostjan Likar and Ziga Spiclin
Validation of white-matter lesion change detection methods on a novel publicly available MRI image database
Neuroinformatics, 14(4):403-420, 2016
[doi: 10.1007/s12021-016-9301-1]
[IF: 3.200 (2016); 17/105 computer science, interdisciplinary applications; 1st quartile]

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Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Accurate landmark-based segmentation by incorporating landmark misdetections
2016 IEEE Symposium on Biomedical Imaging: From Nano to Macro - ISBI 2016, 12-16 Apr, Prague, Czech Republic, J. Kybic, M. Sonka (Eds.), 1072-1075, 2016
[doi: 10.1109/ISBI.2016.7493451]

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Jurij Jemec, Franjo Pernus, Bostjan Likar and Miran Buermen
Along-track calibration of SWIR push-broom hyperspectral imaging system
SPIE Defense + Commercial Sensing 2016, Hyperspectral Imaging Sensors: Innovative Applications and Sensor Standards 2016, 17-21 Apr, Baltimore, MD, USA, D.P. Bannon (Ed.), 9860:98600H, 2016
[doi: 10.1117/12.2223800]

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Dejan Knez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Automated determination of pedicle morphometry in the thoracic spine
2016 IEEE Symposium on Biomedical Imaging: From Nano to Macro - ISBI 2016, 12-16 Apr, Prague, Czech Republic, J. Kybic, M. Sonka (Eds.), 664-667, 2016
[doi: 10.1109/ISBI.2016.7493354]

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Dejan Knez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Automated pedicle screw size and trajectory planning by maximization of fastening strength
Computational Methods and Clinical Applications for Spine Imaging, Third International Workshop and Challenge, CSI 2015, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Lecture Notes in Computer Science 9402:3-13, 2016
[doi: 10.1007/978-3-319-41827-8_1]

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Dejan Knez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Avtomatska metoda nacrtovanja velikosti in trajektorije pedikularnih vijakov
Racunalniska obdelava slik in njena uporaba v Sloveniji - 11. strokovna konferenca - ROSUS 2016, 17. marec, Maribor, Slovenija, B. Potocnik (ur.), 55-68, 2016

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William Mandel, Robert Korez, Marie-Lyne Nault, Stefan Parent and Samuel Kadoury
Classification of progressive and non-progressive scoliosis patients using discriminant manifolds
Proceedings of the 4th MICCAI Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI2016, J. Yao et al. (Eds.), Oct 17, Athens, Greece, 98-108, 2016

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William Mandel, Robert Korez, Marie-Lyne Nault, Stefan Parent and Samuel Kadoury
Classification of Progressive and Non-progressive Scoliosis Patients Using Discriminant Manifolds
Computational Methods and Clinical Applications for Spine Imaging, Fourth International Workshop and Challenge, CSI 2016, held in conjunction with the 19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, Lecture Notes in Computer Science 10182:135-145, 2016
[doi: 10.1007/978-3-319-55050-3_13]

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Tim Jerman, Alfiia Galimzianova, Franjo Pernus, Bostjan Likar and Ziga Spiclin
Combining unsupervised and supervised methods for lesion segmentation
Proceedings of the 1st BrainLes International Workshop held at the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Lecture Notes in Computer Science 9556:45-56, 2016
[doi: 10.1007/978-3-319-30858-6_5]

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Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Deformable model-based segmentation of intervertebral discs from MR spine images by using the SSC descriptor
Computational Methods and Clinical Applications for Spine Imaging, Third International Workshop and Challenge, CSI 2015, held in conjunction with the 18th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2015, Lecture Notes in Computer Science 9402:117-124, 2016
[doi: 10.1007/978-3-319-41827-8_11]

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Matic Ivancic, Peter Naglic, Peter Usenik, Ales Fidler, Franjo Pernus, Bostjan Likar and Miran Buermen
Extraction of optical properties from hyperspectral images by Monte Carlo light propagation model
SPIE Photonics West 2016, Optical Interactions with Tissue and Cells XXVII, Tissue Optics and Optical Properties of Tissue III, 13-18 Feb, San Francisco CA, USA, E.D. Jansen (Ed.), 9706:97061A, 2016
[doi: 10.1117/12.2212807]

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Peter Naglic, Franjo Pernus, Bostjan Likar and Miran Buermen
Extraction of optical properties in the sub-diffuse regime by spatially resolved reflectance spectroscopy
SPIE Photonics West 2016, Optical Interactions with Tissue and Cells XXVII, Tissue Optics and Optical Properties of Tissue IV, 13-18 Feb, San Francisco CA, USA, E.D. Jansen (Ed.), 9706:97061C, 2016
[doi: 10.1117/12.2212947]

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Robert Korez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Joint detection and segmentation of vertebral bodies in CT images by sparse representation error minimization
SPIE Medical Imaging 2016, Image Processing, 27 Feb - 3 Mar, San Diego CA, USA, M.A. Styner, E.D. Angelini (Eds.), 9784:97842Y, 2016
[doi: 10.1117/12.2217087]

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Dejan Knez, Janez Mohar, Robert J. Cirman, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Manual and computer-assisted pedicle screw placement plans: a quantitative comparison
Proceedings of the 4th MICCAI Workshop & Challenge on Computational Methods and Clinical Applications for Spine Imaging - MICCAI-CSI2016, J. Yao et al. (Eds.), Oct 17, Athens, Greece, 78-88, 2016

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Dejan Knez, Janez Mohar, Robert J. Cirman, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Manual and computer-assisted pedicle screw placement plans: a quantitative comparison
Computational Methods and Clinical Applications for Spine Imaging, Fourth International Workshop and Challenge, CSI 2016, held in conjunction with the 19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, Lecture Notes in Computer Science 10182:105-115, 2016
[doi: 10.1007/978-3-319-55050-3_10]

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Robert Korez, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Model-based segmentation of vertebral bodies from MR images with 3D CNNs
Proceedings of the 19th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2016, S. Ourselin et al. (Eds.), 17-21 Oct, Athens, Greece, Lecture Notes in Computer Science 9901:433-441, 2016
[doi: 10.1007/978-3-319-46723-8_50]

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Dejan Knez, Janez Mohar, Bostjan Likar, Franjo Pernus and Tomaz Vrtovec
Quantitative comparison between the straight-forward and anatomical insertion technique for pedicle screw placement
SPIE Medical Imaging 2016, Image Processing, 27 Feb - 3 Mar, San Diego CA, USA, M.A. Styner, E.D. Angelini (Eds.), 9784:978439, 2016
[doi: 10.1117/12.2216028]

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Robert Korez, Benjamin Aubert, Thierry Cresson, Stefan Parent, Tomaz Vrtovec, Jacques de Guise and Samuel Kadoury
Sparse and multi-object pose+shape modeling of the three-dimensional scoliotic spine
2016 IEEE Symposium on Biomedical Imaging: From Nano to Macro - ISBI 2016, 12-16 Apr, Prague, Czech Republic, J. Kybic, M. Sonka (Eds.), 225-228, 2016
[doi: 10.1109/ISBI.2016.7493250]

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Janez Mohar, Dejan Knez, Robert J. Cirman, Rihard Trebse, Rene Mihalic and Tomaz Vrtovec
Comparison of automatically and manually obtained pedicle screw plans in deformities of the thoracic spine
29th Annual Congress of the International Society for Technology in Arthoplasty - ISTA 2016, 5 - 8 Oct, Boston MA, USA, S.B. Murphy (Ed.), #4334, 2016

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Bulat Ibragimov, Franjo Pernus, Primoz Strojan and Lei Xing
TH-CD-206-05: Machine-learning based segmentation of organs at risks for head and neck radiotherapy planning
Medical Physics, 43(6):3883, 2016
[doi: 10.1118/1.4958186]
[IF: 2.617 (2016); 37/126 radiology, nuclear medicine & medical imaging; 2nd quartile]

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